doc. Mgr. Tomáš Vinař, PhD.
professor
Katedra aplikovanej informatiky
Faculty of Mathematics, Physics and Informatics
Comenius University Bratislava
Mlynská dolina F1
842 48 Bratislava
Slovakia
Selected publications
- Vladimir Boza, Peter Peresini, Brona Brejova, Tomas Vinar. DeepNano-blitz: a fast base caller for MinION nanopore sequencers. Bioinformatics, 36(14):4191-4192. 2020.
- Kristina Borsova, Evan D. Paul, Viera Kovacova, Monika Radvanszka, Roman Hajdu, Viktoria Cabanova, Monika Slavikova, Martina Lickova, Lubomira Lukacikova, Andrej Belak, Lucia Roussier, Michaela Kosticova, Anna Liskova, Lucia Madarova, Maria Stefkovicova, Lenka Reizigova, Elena Novakova, Peter Sabaka, Alena Koscalova, Brona Brejova, Edita Staronova, Matej Misik, Tomas Vinar, Jozef Nosek, Pavol Cekan, Boris Klempa. Surveillance of SARS-CoV-2 lineage B.1.1.7 in Slovakia using a novel, multiplexedRT-qPCR assay. Scientific Reports, 11(1):20494. 2021.
- Peter Peresini, Vladimir Boza, Brona Brejova, Tomas Vinar. Nanopore Base Calling on the Edge. Bioinformatics, 37(24):4661-4667. 2021.
- Jozef Sitarcik, Tomas Vinar, Brona Brejova, Werner Krampl, Jaroslav Budis, Jan Radvanszky, Maria Lucka. WarpSTR: determining tandem repeat lengths using raw nanopore signals. Bioinformatics, 39(6). 2023.
- Askar Gafurov, Andrej Balaz, Fabian Amman, Kristina Borsova, Viktoria Cabanova, Boris Klempa, Andreas Bergthaler, Tomas Vinar, Brona Brejova. VirPool: model-based estimation of SARS-CoV-2 variant proportions in wastewater samples. BMC Bioinformatics, 23(1):551. 2022.
Timetable
| Day | Time | Room | Form | Course | Lecturers | ||
|---|---|---|---|---|---|---|---|
| Tue | 08:10 - 09:40 | B | Lecture | 2-INF-150 | Strojové učenie | T. Vinař | |
| Tue | 14:50 - 16:20 | C | Lecture | 1-AIN-105 | Efektívne algoritmy a dátové štruktúry | T. Vinař, J. Hladůvka | |
| Wed | 08:10 - 09:40 | C | Lecture | 1-AIN-105 | Efektívne algoritmy a dátové štruktúry | T. Vinař, J. Hladůvka | |
| Wed | 14:50 - 16:20 | B | Lecture | 2-INF-150 | Strojové učenie | T. Vinař | |
| Wed | 17:20 - 18:50 | I-23 | Seminar | 2-AIN-251 | Seminár z bioinformatiky (3) | B. Brejová, T. Vinař, L. Denti | |
| Wed | 17:20 - 18:50 | I-23 | Seminar | 2-AIN-505 | Seminár z bioinformatiky (1) | T. Vinař, L. Denti, B. Brejová | |
| Fri | 08:10 - 09:40 | M-V | Tutorial | 1-AIN-105 | Efektívne algoritmy a dátové štruktúry | T. Vinař | |
| Fri | 13:10 - 14:40 | F1-109 | Tutorial | 1-AIN-105 | Efektívne algoritmy a dátové štruktúry | V. Boža, T. Vinař | |